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Cherry Thumbprint Cookies — Clean Recipe

5 from 1 vote
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Emma
By: EmmaUpdated: Dec 6, 2025
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Tender buttery thumbprint cookies filled with bright cherry pie filling — an easy, nostalgic bake that shines at holiday gatherings and weeknight treats.

Cherry Thumbprint Cookies — Clean Recipe

This batch of cherry thumbprint cookies has been a fixture on my kitchen counter for years. I first made them for a neighborhood cookie swap one December when I wanted something simple, buttery, and nostalgic that didn’t require fiddly piping or tempering chocolate. The result was instant: a delicate cookie with a crisp edge, a tender interior, and a jewel-like cherry sitting in a small well. One bite brings a contrast of rich butter, soft crumb, and the tart-sweet pop of cherry — it’s the kind of cookie that sparks immediate memories and always gets asked for again.

I learned a few practical lessons the first time I baked them: don’t overwork the dough, keep the indentations shallow so the cookie holds its shape, and use good-quality cherry pie filling for bright flavor and whole cherries when possible. These cookies are forgiving, quick to make, and ideal for bakers of any level. Whether you’re assembling plates for a party, making an afternoon treat with the kids, or building a cookie box for neighbors, they deliver consistent results with minimal fuss.

Why You'll Love This Recipe

  • Simple ingredients you likely already have at home: butter, sugar, flour, eggs, and a jar of cherry pie filling — ready in about 30–40 minutes from start to finish.
  • Hands-on shaping is minimal: roll into 1-inch balls and press an indentation. Great for kids and for producing uniform cookies every time.
  • Customizable finish — roll the dough in sugar for sparkle, drizzle with a vanilla glaze, or dust with powdered sugar for a classic look.
  • Make-ahead friendly: dough can be chilled or frozen, finished cookies freeze well with parchment layers for months, and they travel beautifully.
  • Perfect for holidays and cookie swaps: each cookie holds one cherry so presentation is elegant but effort is low, and they’re easy to portion for gifting.

In my experience, this is the cookie that outperforms its humble ingredients. Guests consistently praise the tender crumb and the way the cherries retain their texture during baking. I’ve brought these to potlucks where they disappeared first; kids love pressing the thumbprint, and adults appreciate the clean, balanced sweetness.

Ingredients

  • Butter (1 cup): Use unsalted butter, softened to room temperature. Unsalted lets you control salt; I favor Plugrá or Land O Lakes for consistent performance and a clean butter flavor.
  • Granulated sugar (1/2 cup): Regular white sugar provides structure and helps the edges crisp. C&H or Domino both work well — roll dough in extra sugar for a sweet, sparkling crust.
  • Egg yolks (2): Egg yolks add richness and a tender, shortbread-like crumb. Separate from whites while cold for easiest separation, then bring to room temperature before mixing.
  • Vanilla extract (1 teaspoon): Pure vanilla extract adds depth. If you have vanilla bean paste, use 1/2 teaspoon for a subtle flecked look and extra aroma.
  • All-purpose flour (2 cups): King Arthur or Gold Medal are reliable; spoon and level when measuring to avoid compacting — too much flour makes the cookie tough.
  • Salt (1/4 teaspoon): Balances sweetness and enhances butter flavor. If using salted butter, taste and reduce added salt slightly.
  • Cherry pie filling (1 cup): About one cherry per cookie — I like Smucker's or a high-quality jarred filling with whole cherries. You can also use preserved sour cherries for a tart variation.

Instructions

Preheat & Prepare: Preheat the oven to 350°F (175°C). Line a baking sheet with parchment paper or a silicone mat. Position racks to allow even heat circulation so cookies bake evenly and edges turn lightly golden in 12–14 minutes. Make the Dough: In a large bowl, cream 1 cup softened unsalted butter with 1/2 cup granulated sugar until light and fluffy, about 2–3 minutes with a hand mixer or 4–5 minutes with a stand mixer. Beat in 2 egg yolks and 1 teaspoon vanilla until smooth. Gradually stir in 2 cups all-purpose flour and 1/4 teaspoon salt until a soft dough forms — mix just until combined to avoid developing gluten. Shape the Cookies: Portion the dough into 1-inch balls (about 1 tablespoon each) and place them 1 1/2 inches apart on the prepared sheet. Use your thumb or the back of a small spoon to make a shallow indentation in the center of each ball — aim for a well about 1/4-inch deep so the cookie keeps structure while holding the filling. Add the Filling: Spoon a small amount of cherry pie filling into each indentation — usually one whole cherry plus a little syrup. Don’t overfill; excess filling will run during baking. If cherries are large, halve them so each cookie has a single, bite-sized fruit. Bake & Cool: Bake for 12–14 minutes until edges are lightly golden and centers are set. Remove from the oven and cool on the baking sheet for 5 minutes to firm up, then transfer to a wire rack to cool completely. Optionally dust with powdered sugar or drizzle with a simple vanilla glaze once fully cooled. User provided content image 1

You Must Know

  • These hold shape best when you don’t press the indentation too deep; a 1/4-inch well is ideal so edges brown while center remains soft.
  • Dough can be chilled up to 48 hours; bring back to room temperature 10–15 minutes before shaping for easier handling.
  • Cookies freeze well: fully baked and cooled, layer with parchment in an airtight container for up to 3 months.
  • Nutrition note: relatively small and portable — expect roughly 130–150 calories per cookie depending on filling and size.

My favorite thing about these cookies is how quickly they become a family favorite. At holiday baking sessions, my niece always volunteers to press the thumbprints — it’s a small job with big payback, and she gets to pick cherries for the prettiest cookies. They’re a dependable choice for cookie swaps because they travel well and almost everyone recognizes the classic profile.

User provided content image 2

Storage Tips

Store cooled cookies in an airtight container at room temperature for up to 4 days. Use parchment layers between rows to prevent sticking and preserve glossy cherry centers. For longer storage, freeze baked cookies in a freezer-safe container up to 3 months, separating layers with parchment. To thaw, move cookies to the refrigerator for 30–60 minutes or leave at room temperature 1–2 hours. Reheat gently at 300°F for 3–5 minutes if you prefer them slightly warm — watch closely so the cherries don’t bubble over.

Ingredient Substitutions

For a dairy-free version, replace butter with a solid vegetable-based stick or coconut shortening measured 1:1; expect a slightly different mouthfeel and less buttery aroma. Swap granulated sugar for a 1:1 sugar substitute for lower sugar content, but texture will change slightly. Use almond flour for a gluten-free take by combining a certified gluten-free all-purpose blend or testing a 1:1 GF flour — chill the dough longer as GF blends can be stickier. For jam variations, raspberry preserves or apricot jam work beautifully; reduce jam quantity a touch to prevent runniness.

Serving Suggestions

Arrange on a festive platter with powdered sugar dusting and fresh cherries for a holiday spread. Pair with hot tea, coffee, or a lightly sweetened milk for an afternoon treat. For dessert plates, add whipped cream or a drizzle of melted dark chocolate for contrast. These are also ideal in cookie gift boxes — line boxes with parchment and include a mix of plain and sugared thumbprints for color variety and texture contrast.

Cultural Background

Thumbprint-style cookies are a classic found across many European baking traditions, often appearing in Scandinavian and Central European holiday baking repertoires. The concept is simple — a short, buttery base with a fruit preserve center — and varies by region in jam choice and spice additions. In North America, the cherry-filled variation became popular as canned and jarred pie fillings became widely available, offering a bright, shelf-stable option that creates an elegant finished cookie without extra preparation.

Seasonal Adaptations

In summer, substitute fresh cherry preserves or macerated fresh cherries with a touch of sugar and lemon for brighter flavor. For winter holidays, use spiced apple butter or cranberry-orange jam and add a pinch of ground cardamom or cinnamon to the dough. Valentine’s Day calls for raspberry jam and heart-shaped presses; for autumn, prune or fig preserves add a rustic depth. Adjust baking time slightly if using wetter fillings — a few extra minutes at the same temperature can help set them.

Meal Prep Tips

For large batches, prepare dough the day before and portion into 1-inch balls on a parchment-lined tray, then chill overnight. This saves shaping time and helps the cookies hold shape. If freezing raw dough, flash-freeze balls on a tray and transfer to a bag; bake directly from frozen adding 1–2 minutes to baking time. Label containers with date and flavor so you can rotate your stash during the season.

These cherry thumbprint cookies are simplicity perfected: minimal steps, maximum nostalgia, and consistent results that please every crowd. Try a batch this weekend and make it your own by experimenting with fillings and finishes — they'll likely become a staple in your baking rotation.

Pro Tips

  • Use room-temperature butter for proper creaming and a tender crumb.

  • Press a shallow 1/4-inch well to prevent filling from spilling during baking.

  • Roll dough balls in granulated sugar for a sparkling exterior before baking.

  • Flash-freeze shaped dough balls if you plan to bake from frozen to preserve shape.

This nourishing cherry thumbprint cookies — clean recipe recipe is sure to be a staple in your kitchen. Enjoy every moist, high protein slice — it is perfect for breakfast or as a wholesome snack any time.

Tags

Sweet TreatsDessertsBakingCookiesRecipesHoliday BakingSweet Treats
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Cherry Thumbprint Cookies — Clean Recipe

This Cherry Thumbprint Cookies — Clean Recipe recipe makes perfectly juicy, tender, and flavorful steak every time! Serve with potatoes and a side salad for an unforgettable dinner in under 30 minutes.

Servings: 24 steaks
Cherry Thumbprint Cookies — Clean Recipe
Prep:20 minutes
Cook:14 minutes
Rest Time:10 mins
Total:34 minutes

Ingredients

Main

Instructions

1

Preheat & Prepare

Preheat oven to 350°F (175°C). Line a baking sheet with parchment paper or silicone mat and position racks for even baking. This ensures consistent browning and crisp edges.

2

Cream Butter and Sugar

In a large bowl, cream 1 cup softened unsalted butter with 1/2 cup granulated sugar until light and fluffy — about 2–3 minutes with a hand mixer. This incorporates air for a tender texture.

3

Add Yolks and Vanilla

Beat in 2 egg yolks and 1 teaspoon vanilla until smooth and homogenous. Egg yolks enrich the dough and help create a short, tender crumb.

4

Stir in Dry Ingredients

Add 2 cups all-purpose flour and 1/4 teaspoon salt, stirring just until a soft dough forms. Avoid overmixing to prevent toughness from gluten development.

5

Shape and Indent

Roll dough into 1-inch balls and place on prepared sheet 1 1/2 inches apart. Use your thumb or the back of a small spoon to make a shallow 1/4-inch indentation in each ball for the filling.

6

Fill and Bake

Spoon a small amount of cherry pie filling (about one cherry and a little syrup) into each indentation. Bake for 12–14 minutes until edges are light golden. Cool 5 minutes on the sheet, then transfer to a wire rack.

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Nutrition

Calories: 140kcal | Carbohydrates: 17g | Protein:
2g | Fat: 8g | Saturated Fat: 2g |
Polyunsaturated Fat: 2g | Monounsaturated Fat:
3g | Trans Fat: 1g | Cholesterol: 253mg | Sodium:
0mg | Potassium: 953mg | Fiber: 0g | Sugar:
0g | Vitamin A: 577IU | Vitamin C: 3mg | Calcium:
47mg | Iron: 6mg

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Cherry Thumbprint Cookies — Clean Recipe

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Cherry Thumbprint Cookies — Clean Recipe

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Food Lover
1 day ago

This recipe looks amazing! Can't wait to try it.

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Hi, I'm Emma!

Chef and recipe creator specializing in delicious Sweet Treats cooking. Passionate about sharing easy-to-follow recipes that bring families together around the dinner table.

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